
Boutique hotels in Tokyo Prefecture
Find and book unique boutique hotels on Airbnb
Top-rated boutique hotels in Tokyo Prefecture
Guests agree: these boutique hotels are highly rated for location, cleanliness, and more.

The Hideout Tokyo -(Double Room)-
We're Central Tokyo's family run hotel for those who want to travel in style. Our petite 5-room hotel offers reasonably priced compact yet cozy accommodation with many of the features you'd expect from a larger,branded property. Private shower&sink. We're located walking distance from many of Tokyo's finest sightseeing spots and just a 4/2 minute walk from JR Yamanote line,Subway Hibiya line connecting you quickly to the rest of the city. ※We’re legal hotel with hotel permit from the government

Keyakian Danran Tatami, traditional Japanese style
Our room is featured real Japanese style. Many Japanese also love this simple and traditional space. It'll be chance to know real Japan! 3 subway 5 mins walk. Tukiji 5 mins by subway, Ginza, Akiba, Asakusa, 15mins by subway without transfer. Here is popular for large family trip. We have 3 separate room with bed and FUTON. Especially family with kids can choose many baby equipment. From NARITA Airport 55 min, HANEDA 25min. We can store your luggage before check-in or after check-out for free!

Modern queen suite with private bathroom - rooftop
Newly built with travelers in mind. The rooms are spacious with Queen size beds (practically unheard-of in Japan). Smart TV - NETFLIX, Wi-Fi, tea and coffee. The bathrooms are fashionable, with large walk in rain showers. LED mirrors to get you ready for whatever lighting you will encounter. Rooms have a bar fridge, microwave and kettle for you to store and prepare ready-made meals and drinks. All rooms come equipped with Air-conditioning, ceiling fans and black-out curtains. Ample storage!

condominium with everything you need for dailylife
・“Only 13 minutes from Shibuya” Convenient access to central Tokyo, where you can relax in a quiet living environment after enjoying sightseeing and shopping. ・Flexible accommodation styles allow you to flexibly adjust the length of stay and type of room, from sightseeing to work, short-term stays to long-term stays. ・Many residents live in share houses who are fluent in English, creating an international and diverse community. You can enjoy new friends and international exchange.

12-min walk to Sensoji - Boutique Hotel
一遊ホテル浅草 is a boutique hotel located in Taito City, offering excellent access to major transportation. Nestled in a quiet residential neighborhood, yet close to Tokyo’s most popular sightseeing spots, this is an ideal base for tourists, couples, and business travelers – only a 12-minute walk from the famous Sensoji Temple, where you can enjoy the blend of traditional culture and modern Tokyo vibes. Plenty of dining options nearby, from traditional Japanese food to stylish cafes.

3rd Place by HIDEOUT DS Family Studio
・3 minutes walk from the Katase Enoshima Station(Odakyu Line) ・2mins walk to the beach We are on the second floor and there are cafes and convenience stores just downstairs!! 【Room】 -Private shower room and toilet 【Facilities】 -Coin Laundry(3 washing machine, 3 dryer) -Microwave -Shared bathroom and toilet 【Services】 -Luggage Storage(before/after check in) 【Access】 -2mins walk from Katase Enoshime Station(odakyu Line) -5mins walk from Enoshima Station(Enoden)

2 NEW Stylish Tokyo Stays | Quiet Area | Organic Linen | 15 Minutes to Shibuya | 3 Minutes to Meguro | Up to 5 People
Experience Tokyo like a local at our organic-concept boutique hotel in Musashi-Koyama, a friendly neighborhood with easy access to central ■ 15 minutes by train to Shibuya ■ 5-minute walk from the station ■ Spacious 44 m² private room ■ Only one guest room per floor ■ Organic cotton bed linen and towels ■ Natural amenities ■ Complimentary organic coffee and herbal tea Enjoy a peaceful and comfortable stay while discovering the everyday charm of Tokyo.

3 min to Sensoji | Skytree View | 2BR Family Apt
Opened in the summer of 2021, this apartment hotel was designed by a well-known Japanese designer. The building has 9 floors and 16 Quad rooms, ideal for families or small groups of 4–5 guests. The hotel is located along the main road near Senso-ji Temple and Asakusa Shrine. Front desk hours: 10:00 AM – 8:00 PM Online customer support: 8:00 PM – 12:00 AM Late-night front desk service: 10:00 PM – 6:00 AM (available on five nights per week)

1 min from Koenji Station/BnA Koenji Room 2F
BnA Home Koenji is an independent art hotel created by the Bed & Art Project (BnA)—an ambitious and experimental hospitality concept that blends art, community, and immersive travel. At BnA, guests don't just stay at a hotel—they stay inside a work of art. Each room is a one-of-a-kind collaboration, designed and built by local artists, architects, textile designers, and carpenters to create a deeply personal and unforgettable experience.

TheMillennialsShibuya/Mixed Smart Pod/1 Guest
Welcome to The Millennials Shibuya, a futuristic accommodation facility equipped with the world's first IOT-equipped "Smart Pod" and a lounge with a coworking space. In addition, there are plenty of common spaces, including a 24-hour shared lounge, a 24-hour self-kitchen, a 24-hour working lounge, a shared shower and toilet, and a shared laundry. 20% of the total area of the hotel is allocated to the common area.

PEGASUS HOTEL (Japanese room) 502
Hi This is Pegasus Hotel New open in 2020, we have two types of standard double rooms and family rooms. The environment is clean and tidy. It is a three-minute walk from Asakusa Bridge Station. , Every year will have Sumidagawa Fireworks Festival, Japanese traditional culture boat house you also can have a nice dinner in the boat, you can have a good time in nearby Tokyo Bay Odaiba Rainbow Bridge, etc.

2nd Floor Artistic Twin Room Inspired by Noh Dream
Welcome to SHISHI NO MA – a spacious 2nd floor room with twin semi-double mattresses, designed for comfort and inspired by the dreamlike world of mugen Nōh (phantasmagoric Noh theater). It is a design hotel that makes use of minimalist design created by Japanese architects and designers. JR山手線の大塚駅から徒歩4分 *The room is private & self check in and out. *JR Yamanote line to Shinjuku 10min / Shibuya 18min
Popular amenities for Tokyo Prefecture boutique hotels
Family-friendly boutique hotels

Luxury Art Penthouse | Tokyo Bay Ocean View |10pax

No Service Hotel 301 / 7 min to Asakusa

Designer loft near Tamachi for families and groups

【Ginza/Tokyo】 Junior Suite /Hotel Vintage Tsukiji

Tabiji Shibuya |10 min Walk from Shibuya sta

Spacious Ueno Stay|Subway 1min|Zoo & Museums|6p

Rill Hotel Asakusa 401 Spacious, Comfortable, Quiet and Cozy

Hotel Suite | 7 min JR Shin-Okubo | 4 min Subway
Boutique hotels with a patio

A relaxing time to live in a 140-year-old house Your own glamping Private "Warehouse MPING hotel"

Washing Machine, Apartment Suite, 5 Min Walk to Skytree Station, Direct Access to Airport, Kitchen, Nearby Izakaya, Amin Hotel

8 min to Yamanote Line | 3BR Family Suite | 49㎡

8 min to Yamanote Line | 6 Guests | 45㎡ | 2BR

TheMillennialsShibuya/Smart Pod Girls Only/1 Guest

5 min walk to Skytree Station, direct access to airport and Disney, kitchen, washing machine, wifi, elevator, Amin Hotel

5 min walk to Skytree Station, 100 inch projection screen in the movie room, direct access to the airport, kitchen, washing machine, bathtub
Other boutique hotel vacation rentals

New hotel/Compact Twin/2 people

Room 202, 3 mins walk from Asakusabashi Station, Asakusa, Akihabara, Ueno neighborhood, kitchenware, kitchen, washing machine, direct access to Haneda and Narita Airport

【Birupaku】Relaxing Maisonette Type Room/ 4ppl

Newly opened hotel-style t suite Subway 3 minutes

Direct to Shinjuku|3min Sugamo|Shop St|WiFi|2pax

[1]2min walk Sta丨Shinjuku area丨free WIFI丨Single丨

4 single beds in Tokyo/2 train stations: Studio B

MANGA Design・1 bed・Free simple breakfast・Free wifi
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