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Villa vacation rentals in Tokyo Prefecture

Find and book unique villas on Airbnb

Top-rated villa rentals in Tokyo Prefecture

Guests agree: these villas are highly rated for location, cleanliness, and more.

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Top guest favorite
Villa in Nakano-ku
4.98 out of 5 average rating, 141 reviews

"Hanaen" 2 minutes to Shinjuku / 80% off for new homes [Rare high-end detached villa with river view and cherry blossoms in Shinjuku] Spacious and comfortable / Shinjuku / Shibuya CBD

2022 [New] Shinjuku is located in🌹 Shinjuku commercial center area! The entire villa has 3 floors/118 square meters. The house is very spacious. There are 4 separate bedrooms, a separate living room and dining room, 4 separate toilets, and 3 separate bathrooms. The entire house faces south with no obstructions. The view is wide open. The house is beautifully decorated, bright, and elegant. It has brand new, high-end Nordic solid wood furniture. All amenities are fully equipped!Fully automatic dishwasher / Direct drinking hot and cold water purifier / Air conditioner / Fresh air system / Floor heating / Air purifier / 5G free high-speed Wi-Fi / 75-inch Internet TV The house is close to 5 stations / The house is unique / Great location / Elegant environment / Quiet / Centennial cherry blossoms / Precious greenery / Birds singing and flowers blooming / Small bridge over a stream / It's as if you are in the oxygen bar of a natural forest park!This is the back garden of Shinjuku!Hundred-year-old cherry blossoms can be seen in the cherry season house!At night, you can enjoy the vibrant night view of Shinjuku and the city center from the terrace!After your day is exhausted from your trip, it will take your heart out!Make your body and mind truly relaxing! Shinjuku is located in the center of Tokyo!Southeast Asia Never Night!Business and Entertainment is super-busy!Super convenient transportation!Shopping malls / Electronics malls / Entertainment centers / World famous brand stores / Restaurants with food from all over the world / Bars, etc. / Everything you need for dining, accommodation, transportation, sightseeing, shopping, and entertainment can be found here!This is your vacation shopping paradise! The butler of the property is 24 hours a day to fully support and serve your travels! Early check-in and late check-out and free luggage storage available

Top guest favorite
The traditional two-story villa features a wooden façade with a tiled roof. Large windows framed with wooden slats allow natural light to fill the interior. A decorative wreath adorns the door, enhancing the welcoming entrance. The exterior is complemented by stone pebbles at the base.
Villa in Shinjuku
4.99 out of 5 average rating, 142 reviews

Haku Yujuzhiting Japanese-style inn / Air conditioning throughout the house / Floor heating throughout the house / Bustling area of Shinjuku / 4 minutes to Higashi-Shinjuku Station / Maximum 7 people

Explore the Showa era and stroll through Shinjuku. In the heart of Tokyo's busiest urban area, a rare all-Japanese-style inn is tucked away, like a pearl cherished by time, quietly resting here. It offers the unparalleled convenience of central Tokyo while retaining the tranquility and warmth of a traditional Japanese living space, allowing you to experience the most authentic Japanese life in the bustling city. House Features ★ Floor heating system throughout the house Even in the cold winter of Tokyo, you can enjoy a warm and comfortable living experience. ★ Heart of Shinjuku, Tokyo Located in the busiest downtown area of Tokyo, you can feel the vibrancy of the city while enjoying a rare peaceful space. ★ Super convenient transportation Just a 4-minute walk from Higashi-Shinjuku subway station, with easy access to all major popular places and business districts in Tokyo. Living experience in the surrounding area Not only is it convenient for travel, but it also allows you to live like a local. 🍞 5 meters on foot An online-famous bakery loved by local residents, where you can enjoy freshly baked Japanese bread every day. ☕ 20 meters on foot A popular Japanese barista coffee shop where you can experience the most authentic coffee culture on a Tokyo street corner. 🍶 20 meters on foot Traditional Izakaya frequented by the neighborhood. 🏪 3 mins walk Convenience store, open 24 hours for your daily needs. Attractions nearby 7 minutes walk to: Shinjuku Kabukicho Various specialty restaurants and cafes Convenience stores and drugstores 15-minute walk to: Isetan Shinjuku Store Don Quijote Shinjuku shop Korean Street (Shin-Okubo) Hanazono-jinja Shrine Shinjuku Golden-Gai

Superhost
Villa in Nakano-ku
4.83 out of 5 average rating, 106 reviews

Your Choice, a newly built villa in Shinjuku Ward in April 2024, 5 minutes walk to Nakai Station. Comfortable, clean, and convenient transportation

Hi! Welcome to Tokyo, I will treat you like friends and family, and do my best for you. I hope you have a wonderful vacation and leave with good memories! This is a three-story detached house in Shinjuku area, you can avoid the inquiries and disturbances of the manager. The apartment is a 1-minute walk to Ochirikawa, where cherry blossoms bloom in spring, and the fallen cherry blossoms are colorful. You can enjoy convenient shopping in Shinjuku while experiencing the quiet Japanese slow life of walking by the river. ==Getting around== The villa has free parking There are 4 subway lines around. Gathering Japanese popular cuisine and famous fast food restaurants; Matsumoto Kiyoshi Duty-Free Drugstore, 24-hour convenience store nearby for you to choose from, super convenient! Nearby stations: Nakano subway station (Toei Oedo line, Seibu Shinjuku line) 5 min walk to Shinjuku, Roppongi, Tsukiji Market, Meiji Jingu, Tokyo TV Station and other famous attractions, business districts Ochiai Subway Station (Tozai Line) 9 min walk Direct access to Waseda University, Imperial Palace, Tokyo Disney Higashi-Nakano Subway Station (JR Chuo-Sobu Line) 13-minute walk Direct access to Soyo Art Gallery Shinjuku [Seibu Shinjuku Station] - 8 mins Skytree [Oshiage Skytree Station] - 38 mins Akihabara [Akihabara Station] - 30 minutes Ginza [Ginza Station] - 29 mins Disney [Maihama Station] - 60 minutes About 77 minutes from Narita Airport (1 transfer) about 1420 yen; About 60 minutes from Haneda Airport (1 transfer) about 650 yen

Superhost
Villa in Shibuya
4.94 out of 5 average rating, 108 reviews

Authentic Samurai House | 100㎡ | Shinjuku

Reopened after renovation starting September 2026 This is a significant discount off the regular price. You can rent the entire 2-story house of about 100 m² in the Shinjuku area of Tokyo for up to 10 people. It currently has 4 bedrooms and is recommended for family vacations, trips with 2-3 families, and group stays.There is also "Kids Hideaway", which is like a secret base where children can have fun. There are two sets of high-definition projectors and large screens. There is also a TV in the living and dining area.3 in total. You can enjoy Netflix, YouTube, and more with your own accounts. Fully equipped with 2 bathrooms, 2 toilets, kitchen, washer and dryer, and high-speed WiFi. There is a 24-hour convenience store 10 seconds away on foot and a large supermarket 3 minutes away on foot, which is convenient.The nearest bus stop is a 3-minute walk, and it takes about 10 minutes by bus to Shinjuku Station.While it is close to the city center, the surrounding area is a quiet residential neighborhood. 10-minute walk from the nearest station. There is a conveyor belt sushi restaurant and a local shopping street nearby.

Top guest favorite
A spacious villa is surrounded by a lush garden featuring well-trimmed hedges and a variety of trees. A covered porch provides a shaded area for relaxation, and elegant white garden furniture complements the outdoor space, inviting guests to enjoy the serene environment.
Villa in Fujikawaguchiko
5.0 out of 5 average rating, 124 reviews

Mt.Fuji Hidden Garden/Near Oishi Park/Entire Villa

A villa nestled in a vast garden on a plateau. Enjoy a relaxing and luxurious vacation in a spacious and quiet room. This private rental villa is ideal as a base for sightseeing in Mt. Fuji. Located on the scenic north shore of Lake Kawaguchi with a view of Mt. Fuji across the lake, the villa is surrounded by abundant nature and beautiful trees, and offers a high level of privacy. From Oishi Park and the shore of Lake Kawaguchi, which are a 5-minute walk away, you can enjoy unobstructed, dynamic, and breathtaking views of Mt. Fuji. E-bikes are provided at the Villa, so please use them to explore the area around the lake and to go to nearby restaurants and convenience stores. We provide free dinner (Obento) for guests staying, so you can stay with peace of mind even if you arrive late. Enjoy the best vacation, surrounded by a beautiful garden, immersed in tranquility and time flowing at a leisurely pace. We look forward to your visit.

Top guest favorite
A modern black house is framed by lush green trees and plants, set against a clear blue sky. Large windows are visible, providing a glimpse of the interior. The natural landscape enhances the serene environment surrounding the property.
Villa in Hakone
4.97 out of 5 average rating, 627 reviews

[SAKURA Villa] Natural hot spring★ resort atmosphere Heal in★ nature [Hakone] [Koshimadani]

We offer a stylish house with a private hot spring bath in Koshimadani. It is a 7-minute walk from the Saru-no-Chaya bus stop, making it very convenient. (The front road is a steep slope.) The natural hot spring baths are constantly replenished by the source spring and can be enjoyed 24 hours a day. The hot spring source is Kowakudani Onsen, which is weakly alkaline. We also have a★ BBQ space for your convenience! (We also provide equipment for rent. We will charge you 4,000 yen after use. ) We have introduced a★ bioethanol heater for★ winter only. Please let me know when you use it. We'll charge you 2,000 yen after use. Parking for 2 cars is available on site. Looking forward to welcoming you! * The entire house will be rented, but the price will vary depending on the number of people. The displayed price is for 2 people, so please enter the correct number of people before booking.

Guest favorite
Villa in Fujikawaguchiko
4.96 out of 5 average rating, 112 reviews

Private Mt Fuji Rooftop Deck|16 Guests| BBQ Villa

Private rooftop with panoramic Mt. Fuji views Up to 16 guests (ideal for families & groups) 9 min drive from Kawaguchiko Station Rooftop deck: Mt. Fuji & starry sky Covered BBQ balcony (Weber grill optional) Scenic bath with Mt. Fuji view 3 bedrooms / 6 double beds + 4 futons Premium Japan Bed “Silky Pocket” beds 2 toilets, 2 wash areas, + shower 65” TV, full kitchen, WiFi, washer & dryer 10 min walk: convenience stores & supermarket 7 min drive to Lake Kawaguchi Free parking (up to 4 cars)

Top guest favorite
Villa in Taitō-ku
4.96 out of 5 average rating, 101 reviews

JR Yamanote Line 3 minutes | 110㎡ entire villa | 9 people | 1 stop to Ueno · Direct access to Asakusa

🌟The hotel is Uguisudani Station on the Yamanote Line, just a 3-minute walk from the North Exit. Within a 3-minute walk, you’ll find restaurants, drugstores, izakayas, and a large supermarket. The location is extremely convenient 🌟The newly built villa covers an area of 110 square meters and can accommodate up to 10 people. It is luxuriously decorated and fully equipped, offering Dyson hairdryers and Pola branded toiletries, providing you with a comfortable and high-end travel experience

Guest favorite
A spacious rooftop deck is featured, equipped with a large dining table set for outdoor dining. Comfortable lounge chairs are positioned nearby. A gas grill is visible, with a scenic view of Mount Fuji and a bright sky overhead.
Villa in Fujikawaguchiko
4.97 out of 5 average rating, 611 reviews

Spacious House with Rooftop BBQ and Mt. Fuji Views

A private house for max 16 guests with a rooftop offering stunning Mt. Fuji views and BBQ facilities Rooftop: dining table, sofa set, and optional BBQ grill (5,800yen) Living: kitchen, dining set and 100-inch projector with sofa set Walking distance to a café, restaurant, convenience store, and Lake Kawaguchi 2 washlets, 2 sinks, 1 full bathroom, and 1 shower room 3 bedrooms with 2 double beds each 10 min by car from the station, parking for 4 cars. 5 min walk from Kodate bus stop.

Top guest favorite
The entrance features a modern architectural design with a combination of brick and wood elements. A wooden gate and fence enclose a small garden area with potted plants, adding a touch of greenery to the space. A warm entry door is visible in the background.
Villa in Kita-ku
4.96 out of 5 average rating, 101 reviews

Lili's Zen Garden Retreat-Yamanote Line sta. 4mins

Experience authentic Japanese living in this traditional detached house, just a 4-minute walk from the Komagome station. Relax in the elegant and refined Japanese-style living room, where you can gather around a tea table for pleasant conversations and reflections on life. With a fully equipped kitchen and laundry room, you'll enjoy the comfort, ease, and convenience of home. If you're looking for more than just a typical stay, and wish to immerse yourself in true Japanese lifestyle.

Superhost
An interior space features a modern, open layout with high wooden ceilings and large glass doors. Light wooden beams contrast against dark walls, and a spacious sofa offers seating in the center. A dining area is visible in the background, enhancing the inviting atmosphere.
Villa in Shimoda
4.98 out of 5 average rating, 502 reviews

A detached house with an open-air hot spring bath.

** A private lodge with a quiet hot spring nestled in a villa area 〜 Reigetsu 〜 ** It is a one-story house built with Japanese pine. A spacious open-air hot spring bath is also available for private use. We hope that you will have a relaxing time in a quiet and peaceful villa area. ・Rental of the whole house ・ Spacious private hot spring with open-air bath ・5 minutes by car to the beach ・There is a parking lot on the premises ・ Free Wi-Fi optical line connection

Superhost
Villa in Kōtō-ku
4.82 out of 5 average rating, 204 reviews

[Small Hotel, House of Trees, 42 sqm] 2nd floor, 3 minutes from Morishita station, maximum 5 people, Machiya-style wooden house for rent on one floor

Kinoie is a licensed accommodation where you can rent an entire floor of a wooden house and feel at home. It offers safety, a kitchen, laundry, and high-speed internet, perfect for business trips, sightseeing, or exams in Tokyo. Rooms feature traditional tatami mats made from natural igusa (soft rush grass), which have a distinct scent many find relaxing. This aroma is natural, not mold or dirt. Enjoy the authentic Japanese atmosphere and a peaceful stay.

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