Boutique hotel vacation rentals in Shinjuku

4.93 out of 5 average rating, 107 reviews

A traditional Japanese-style room is presented, featuring tatami flooring and a low wooden table. Zabuton cushions are arranged around the table. In the background, a modern kitchen is visible, with a dining area that includes several chairs and soft lighting.

Hotel room in Chuo City

90sqm. Tatami, traditional Japanese style room

Our room is featured real Japanese style. Many Japanese also love this simple and traditional space. It'll be chance to know real Japan! 3 subway 5 mins walk. Tukiji 5 mins by subway, Ginza, Akiba, Asakusa, 15mins by subway without transfer. Here is popular for large family trip. We have 3 separate room with bed and FUTON. Especially family with kids can choose many baby equipment. From NARITA Airport 55 min, HANEDA 25min. We can store your luggage before check-in or after check-out for free!

4.88 out of 5 average rating, 695 reviews

Hotel room in Ueno

The Hideout Tokyo -(Double Room)-

We're Central Tokyo's family run hotel for those who want to travel in style. Our petite 5-room hotel offers reasonably priced compact yet cozy accommodation with many of the features you'd expect from a larger,branded property. Private shower&sink. We're located walking distance from many of Tokyo's finest sightseeing spots and just a 4/2 minute walk from JR Yamanote line,Subway Hibiya line connecting you quickly to the rest of the city. ※We’re legal hotel with hotel permit from the government

4.83 out of 5 average rating, 732 reviews

The room features a modern design with a lofted sleeping area containing two single beds and an additional set of single beds below. A small kitchenette and a wooden staircase are visible, along with large windows providing natural light.

Hotel room in Ryōkoku

4 single beds in Tokyo/2 train stations: Studio B

A quiet, modern & unique structured room with 4single beds & a private bathroom. 2train stations in 10min. walk, easy access to Shinjuku, Shibuya, Akihabara, Asakusa, Tokyo Dome and Disney Resort! Not 24H open reception, MUST arrive by 11PM. After 11PM check in is not available. ＊No early check in (from 3PM) ＊No late check in (by 11PM) ＊No late check out (by 10AM) ＊No discount. ＊Max : 4people. ＊Cleaning will be done once in 5nights. Visit our Studio A room : https://www.airbnb.jp/rooms/40459587

4.91 out of 5 average rating, 103 reviews

The room features two spacious twin beds dressed in neutral tones, with soft linens and pillows. Natural light enters through horizontal blinds on a window. A sleek wooden door leads to a private bathroom, while light wood flooring complements the modern design.

Hotel room in Kagurazaka

Standard Room｜Accessible｜20mShinjuku｜Kagurazaka

Barrier-free room ideal for families or small groups. The ground-floor 30 m² twin sleeps up to 4 with two Simmons double beds. In-room: free Wi-Fi, A/C, mini-fridge, air-purifier, safe, TV and hair-dryer. Bathroom stocked with shampoo, conditioner, body & hand soap, towels, gowns, slippers, toothbrush set, cotton kit, razor, sponge and brush. No on-site parking or washer—please use nearby coin lots and laundromats. Fee-based rentals (limited): hair iron, board games, projector, Fire TV Stick.

Top guest favorite

A cozy room features a spacious bed with fresh linens, accompanied by a ceiling fan and soft lighting. An open shelving unit displays decorative items, while a bar fridge and microwave are present for convenience. Warm wood flooring adds to the welcoming ambiance.

4.97 out of 5 average rating, 237 reviews

④ Newly built in 2020/Queen bed/Modern bathroom/Rain shower Sunshine City 3 minutes

Newly built with travelers in mind. The rooms are spacious with Queen size beds (practically unheard-of in Japan). Smart TV, Wi-Fi, tea and coffee. The bathrooms are fashionable, with large walk in rain showers. LED mirrors to get you ready for whatever lighting you will encounter. Rooms have a bar fridge, microwave and kettle for you to store and prepare ready-made meals and drinks. All rooms come equipped with Air-conditioning, ceiling fans and black-out curtains. Ample storage space also!

Hotel room in Shinjuku City

A modern room features distinctive purple lighting along the ceiling, paired with soft white walls. A spacious bed is positioned at the back, while a sleek television and mini-fridge are located near a striped couch and a marble accented coffee table.

4.89 out of 5 average rating, 36 reviews

Free late check out ② 10 minutes from Shinjuku

"HOTEL G7" Located in the heart of Kabukicho, the world's biggest entertainment district. 20 minutes walk from Shinjuku Station East Exit. A quick taxi ride. 15 minutes from Higashi-Shinjuku Station to Roppongi. A love hotel = motel, but with a different design. There are no hotels in this location at this price. このエリアはラブホテルエリアですが近年はairbnbで貸し出す事多いです。 Rooms will be assigned randomly. Your room may differ from the one pictured Private toilet and bathroom available All rooms are non-smoking

4.86 out of 5 average rating, 1,024 reviews

The hotel exterior is illuminated at night, highlighting the contemporary architectural design. Large windows display a cozy lobby area with soft seating and decorative wall art. A welcoming sign reflects the hotel's name, contributing to a warm atmosphere.

Hotel room in Asakusa

New Open! 2 bedrooms 1 living room + bar kitchen! Family room for 4-5 people! Sensoji Temple View! Night view of the Skytree from the balcony! Direct access to Haneda & Narita Airport!

the Moto Hotel Asakusa is a new hotel opened in June 2021. The nearest station is Ginza sen-Asakusa station 7-8mins by walking. JR Ueno station is walking by 30 mins or 3 steps by Ginza Line(from Asakusa station to Ueno station)is 6 mins. Askusa is famous for the Sensō-ji and it's only 1min from us. The development of Asakusa as an entertainment district during the Edo period so there's many delicious & traditional food & store surround us. The Kappabashi Dougu street is 7mins by foot too.

4.87 out of 5 average rating, 76 reviews

A simple bedroom features a spacious bed with light bedding and neatly arranged towels. A small table is positioned beside the bed, and a compact sink is located against the wall. Natural light enters through the window, which is covered with sheer curtains.

Hotel room in Kawasaki

A perfect condominium for business or leisure

・“Only 13 minutes from Shibuya” Convenient access to central Tokyo, where you can relax in a quiet living environment after enjoying sightseeing and shopping. ・Flexible accommodation styles allow you to flexibly adjust the length of stay and type of room, from sightseeing to work, short-term stays to long-term stays. ・Many residents live in share houses who are fluent in English, creating an international and diverse community. You can enjoy new friends and international exchange.

4.86 out of 5 average rating, 79 reviews

A spacious guest room features a minimalist design with natural wood accents. Two yellow decorative pillows rest on a large bed, adorned with a textured quilt. A window offers views of the city skyline, allowing natural light to brighten the room.

Hotel room in Taito City

12-min walk to Sensoji - Boutique Hotel

一遊ホテル浅草 is a boutique hotel located in Taito City, offering excellent access to major transportation. Nestled in a quiet residential neighborhood, yet close to Tokyo’s most popular sightseeing spots, this is an ideal base for tourists, couples, and business travelers – only a 12-minute walk from the famous Sensoji Temple, where you can enjoy the blend of traditional culture and modern Tokyo vibes. Plenty of dining options nearby, from traditional Japanese food to stylish cafes.

Hotel room in Shimokitazawa

A modern kitchenette is presented with wooden cabinetry and a concrete countertop. Bar stools are arranged at a small counter, while a large window brings in natural light. Decorative plants and artwork enhance the inviting space.

4.94 out of 5 average rating, 153 reviews

illi Sun Shimokitazawa 301 | 1 min from station

【1 min walk from Shimokitazawa Stn / Max 6 guests/ Entire floor to yourself】 Each of our four rooms features a unique design, adorned with elements that capture the essence of Shimokitazawa's cultural richness and charm. Tailored for travelers in search of a luxurious and playful retreat after exploring the lively streets and vibrant city center. Enter a realm where you can unwind and detach from Tokyo's hectic urban rhythm in a truly remarkable setting.

Top guest favorite

A vibrant mural depicting a pack of wolves in motion covers the walls and ceiling of the room. The colorful design features flowing patterns and dynamic shapes, creating an immersive environment. Two single beds are positioned against the vivid backdrop, enhancing the artistic atmosphere.

Hotel room in Suginami City

4.94 out of 5 average rating, 107 reviews

Stay in Art 1 min from Koenji Sta./BnA Koenji 2F

BnA Home Koenji is an independent art hotel created by the Bed & Art Project (BnA)—an ambitious and experimental hospitality concept that blends art, community, and immersive travel. At BnA, guests don't just stay at a hotel—they stay inside a work of art. Each room is a one-of-a-kind collaboration, designed and built by local artists, architects, textile designers, and carpenters to create a deeply personal and unforgettable experience.

4.81 out of 5 average rating, 142 reviews

The image displays three smart pods featuring semi-double beds with dark, textured bedding. Each pod includes a mirror and a small hanging area for clothing. Soft lighting creates a calming ambiance, highlighting the modern and organized layout of the sleeping spaces.

Hotel room in Shibuya

TheMillennialsShibuya/Mixed Smart Pod/1 Guest

Welcome to The Millennials Shibuya, a futuristic accommodation facility equipped with the world's first IOT-equipped "Smart Pod" and a lounge with a coworking space. In addition, there are plenty of common spaces, including a 24-hour shared lounge, a 24-hour self-kitchen, a 24-hour working lounge, a shared shower and toilet, and a shared laundry. 20% of the total area of the hotel is allocated to the common area.

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Popular amenities for Shinjuku boutique hotel rentals

Kitchen

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Pool

Free parking on premises

Air conditioning

Family-friendly boutique hotels rentals

Top guest favorite

The room features a unique wall mural inspired by nature, showcasing stylized trees. Two spacious beds are covered with white linens, accented by soft pillows. A pendant light hangs from a wooden structure above, adding a warm glow to the calming space.

4.97 out of 5 average rating, 193 reviews

2nd Floor Artistic Twin Room Inspired by Noh Dream

A spacious room features a queen size bed with a decorative pillow and a cozy sofa. A flat-screen TV is mounted on the wall. Storage is provided with an open wardrobe and a small desk. Soft lighting illuminates the room, complemented by dark curtains.

4.94 out of 5 average rating, 126 reviews

Modern queen suite with private bathroom - rooftop

A simple guest room is featured with a spacious bed dressed in a patterned comforter. A television is situated on a low wooden stand against the wall. Natural light enters through two windows, illuminating the neutral-toned walls and wooden flooring.

Hotel room in Oshiage

4.6 out of 5 average rating, 68 reviews

Skytree Station 5 min walk, direct access to airport and Disney, kitchen, washing machine, wifi, elevator, Amin Hotel

A spacious room features a brown double bed with a yellow and blue blanket casually placed. Red sofas create a cozy seating area, complemented by a television and small coffee table. Large windows allow natural light to fill the space, enhanced by soft curtains.

Hotel room in Nakano City

4.57 out of 5 average rating, 154 reviews

Shinjuku 10mins! Relaxing room max 4ppl!

The spacious loft area features two bedding arrangements and a comfortable chair alongside a glass coffee table. A kitchenette is visible with modern appliances, while a staircase leads to the upper sleeping loft. Soft, neutral tones create a calming atmosphere.

Hotel room in Azabudai

4.8 out of 5 average rating, 118 reviews

Spacious apartment perfect for groups and families

A bright room features a spacious bed with a decorative pillow, complemented by a cozy sofa to the side. A large window covered with dark curtains allows natural light. Shelving and storage units provide practical organization. A wall-mounted TV adds convenience.